Package: amadeus 2.0.1
Kyle Messier
amadeus: Accessing and Analyzing Large-Scale Environmental Data
Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calculate_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For sum_edc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Authors:
amadeus_2.0.1.tar.gz
amadeus_2.0.1.zip(r-4.7)amadeus_2.0.1.zip(r-4.6)amadeus_2.0.1.zip(r-4.5)
amadeus_2.0.1.tgz(r-4.6-any)amadeus_2.0.1.tgz(r-4.5-any)
amadeus_2.0.1.tar.gz(r-4.7-any)amadeus_2.0.1.tar.gz(r-4.6-any)
amadeus_2.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
amadeus/json (API)
NEWS
| # Install 'amadeus' in R: |
| install.packages('amadeus', repos = c('https://niehs.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/niehs/amadeus/issues
Pkgdown/docs site:https://niehs.github.io
Last updated from:bb0cd5dc0f. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 311 | ||
| source / vignettes | OK | 319 | ||
| linux-release-x86_64 | OK | 273 | ||
| macos-release-arm64 | OK | 146 | ||
| macos-oldrel-arm64 | OK | 178 | ||
| windows-devel | OK | 270 | ||
| windows-release | OK | 238 | ||
| windows-oldrel | OK | 274 | ||
| wasm-release | OK | 164 |
Exports:apply_extentas_mysftimebucket_time_by_unitcalc_apply_time_summarycalc_check_timecalc_extents_overlapcalc_messagecalc_prepare_exact_geomscalc_prepare_locscalc_prepare_weightscalc_return_locscalc_setcolumnscalc_summarize_bycalc_summarize_native_timecalc_summarize_temporalcalc_timecalc_weighted_funcalc_workercalculate_covariatescalculate_cropscapecalculate_droughtcalculate_ecoregioncalculate_edgarcalculate_geoscalculate_gmtedcalculate_goescalculate_gridmetcalculate_groadscalculate_hmscalculate_huccalculate_koppen_geigercalculate_laggedcalculate_merra2calculate_modiscalculate_modis_dailycalculate_narrcalculate_neicalculate_nlcdcalculate_populationcalculate_prismcalculate_temporal_dummiescalculate_terraclimatecalculate_tricheck_by_timecheck_destfilecheck_for_null_parameterscheck_fun_temporalcheck_geomcheck_mysfcheck_mysftimecheck_unsupported_bycheck_url_statuscheck_urlscollapse_nlcddownload_aqsdownload_cropscapedownload_datadownload_droughtdownload_ecoregiondownload_edgardownload_geosdownload_gmteddownload_goesdownload_gridmetdownload_groadsdownload_hashdownload_hmsdownload_hucdownload_improvedownload_koppen_geigerdownload_merra2download_modisdownload_narrdownload_neidownload_nlcddownload_permitdownload_populationdownload_prismdownload_remove_commanddownload_remove_zipsdownload_rundownload_run_methoddownload_sanitize_pathdownload_setup_dirdownload_sinkdownload_terraclimatedownload_tridownload_unzipdrought_weekly_datesdt_as_mysftimeextent_to_modis_tilesextract_urlsgenerate_date_sequencegenerate_time_sequenceget_geos_infoget_merra2_infoget_modis_infoget_tokenget_tri_infogoes_parse_start_datetimeis_date_propernarr_variablenormalize_by_time_unitprocess_aqsprocess_blackmarbleprocess_blackmarble_cornersprocess_collectionprocess_conformityprocess_covariatesprocess_cropscapeprocess_droughtprocess_ecoregionprocess_edgarprocess_flatten_sdsprocess_geosprocess_gmtedprocess_gmted_codesprocess_goesprocess_gridmetprocess_gridmet_codesprocess_groadsprocess_hmsprocess_hucprocess_improveprocess_koppen_geigerprocess_locs_radiusprocess_locs_vectorprocess_merra2process_merra2_timeprocess_modis_dailyprocess_modis_mergeprocess_modis_swathprocess_modis_warpprocess_narrprocess_neiprocess_nlcdprocess_parse_ncdf_day_codesprocess_populationprocess_prismprocess_sedac_codesprocess_terraclimateprocess_terraclimate_codesprocess_triprocess_variable_codesread_commandsrename_timesetup_nasa_tokensf_as_mysftimesftime_as_mysftimesftime_as_sfsftime_as_spatrastersftime_as_spatrdssftime_as_spatvectorspatraster_as_sftimespatrds_as_sftimespatvector_as_sftimesum_edc
Dependencies:abindarchiveaskpassclassclassIntclicollapsecpp11curldata.tableDBIdplyre1071exactextractrgenericsgluehttr2KernSmoothlatticelifecyclemagrittrMASSopensslpillarpkgconfigproxypurrrR6rappdirsrasterrbibutilsRcppRdpackrlangs2sfsftimespstarsstringistringrsysterratibbletidyrtidyselectunitsutf8vctrswithrwk
Computational Considerations
Rendered fromcomputational_considerations.Rmdusingknitr::rmarkdownon May 27 2026.Last update: 2026-05-20
Started: 2026-05-20
download_data Function
Rendered fromdownload_functions.Rmdusingknitr::rmarkdownon May 27 2026.Last update: 2026-05-21
Started: 2024-02-08
Protected Data Sources
Rendered fromprotected_datasets.Rmdusingknitr::rmarkdownon May 27 2026.Last update: 2026-05-20
Started: 2024-07-23
