{ "_id": "6a17347dacfb0bcc41d946e8", "Package": "amadeus", "Title": "Accessing and Analyzing Large-Scale Environmental Data", "Version": "2.0.1", "Authors@R": "c(\nperson(given = \"Mitchell\", family = \"Manware\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0009-0003-6440-6106\")),\nperson(given = \"Insang\", family = \"Song\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0001-8732-3256\")),\nperson(given = \"Eva\", family = \"Marques\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0001-9817-6546\")),\nperson(given = \"Mariana\", family = \"Alifa Kassien\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0003-2295-406X\")),\nperson(given = \"Elizabeth\", family = \"Scholl\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-2727-1954\")),\nperson(given = \"Kyle\", family = \"Messier\", role = c(\"aut\", \"cre\"), email = \"kyle.messier@nih.gov\", comment = c(ORCID = \"0000-0001-9508-9623\")),\nperson(\"Spatiotemporal Exposures and Toxicology Group\", role = c(\"cph\"))\n)", "Maintainer": "Kyle Messier ", "Description": "Functions are designed to facilitate access to and utility\nwith large scale, publicly available environmental data in R.\nThe package contains functions for downloading raw data files\nfrom web URLs (download_data()), processing the raw data files\ninto clean spatial objects (process_covariates()), and\nextracting values from the spatial data objects at point and\npolygon locations (calculate_covariates()). These functions\ncall a series of source-specific functions which are tailored\nto each data sources/datasets particular URL structure, data\nformat, and spatial/temporal resolution. The functions are\ntested, versioned, and open source and open access. For\nsum_edc() method details, see Messier, Akita, and Serre (2012)\n.", "RdMacros": "Rdpack", "Encoding": "UTF-8", "VignetteBuilder": "knitr, rmarkdown", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testhat/edition": "3", "License": "MIT + file LICENSE", "URL": "https://niehs.github.io/amadeus/", "BugReports": "https://github.com/NIEHS/amadeus/issues", "Language": "en-US", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibarchive-dev libicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev", "Repository": "https://niehs.r-universe.dev", "Date/Publication": "2026-05-27 17:07:30 UTC", "RemoteUrl": "https://github.com/niehs/amadeus", "RemoteRef": "HEAD", "RemoteSha": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 18:08:04 UTC", "User": "root" }, "Author": "Mitchell Manware [aut, ctb] (ORCID:\n),\nInsang Song [aut, ctb] (ORCID: ),\nEva Marques [aut, ctb] (ORCID: ),\nMariana Alifa Kassien [aut, ctb] (ORCID:\n),\nElizabeth Scholl [ctb] (ORCID: ),\nKyle Messier [aut, cre] (ORCID:\n),\nSpatiotemporal Exposures and Toxicology Group [cph]", "MD5sum": "ad5d0813d4a8ac7d47122cc54d79ca44", "_user": "niehs", "_type": "src", "_file": "amadeus_2.0.1.tar.gz", "_fileid": "c09ee7c76753267f001afbd646ce151dbae8ee68964fed2126f80e2071d1cd53", "_filesize": 1250056, "_sha256": "c09ee7c76753267f001afbd646ce151dbae8ee68964fed2126f80e2071d1cd53", "_created": "2026-05-27T18:08:04.000Z", "_published": "2026-05-27T18:14:21.568Z", "_distro": "noble", "_jobs": [ { "job": 78142517861, "time": 311, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7248228753" }, { "job": 78142517778, "time": 273, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7248214285" }, { "job": 78142518166, "time": 178, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7248179692" }, { "job": 78142517851, "time": 146, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7248167572" }, { "job": 78141539481, "time": 319, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7248112275" }, { "job": 78142517915, "time": 164, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7248174262" }, { "job": 78142517848, "time": 270, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7248213514" }, { "job": 78142517873, "time": 274, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7248215447" }, { "job": 78142517927, "time": 238, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7248202166" } ], "_buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/niehs/amadeus", "_commit": { "id": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "author": "{SET}group <127860447+kyle-messier@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #246 from NIEHS/fix/coverage-timeout-spei-smoketest\n\nci: disable scheduled test-live runs (manual dispatch only)", "time": 1779901650 }, "_maintainer": { "name": "Kyle Messier", "email": "kyle.messier@nih.gov", "login": "kyle-messier", "orcid": "0000-0001-9508-9623", "description": "Kyle P Messier, PhD \nStadtman Investigator -- \nGeospatial exposure and risk assessment methods with tox data integration. \n@NIEHS \n", "uuid": 127860447 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "sftime", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "terra", "version": ">= 1.8-50", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "exactextractr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stringi", "role": "Imports" }, { "package": "stars", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "archive", "role": "Imports" }, { "package": "collapse", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "doRNG", "role": "Suggests" }, { "package": "FNN", "role": "Suggests" }, { "package": "furrr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "lwgeom", "role": "Suggests" }, { "package": "maps", "role": "Suggests" }, { "package": "mirai", "role": "Suggests" }, { "package": "nhdplusTools", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "stringr", "role": "Suggests" }, { "package": "targets", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tigris", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "niehs", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-22", "n": 2 }, { "week": "2025-31", "n": 2 }, { "week": "2025-32", "n": 1 }, { "week": "2025-33", "n": 2 }, { "week": "2025-35", "n": 1 }, { "week": "2025-37", "n": 2 }, { "week": "2026-04", "n": 2 }, { "week": "2026-05", "n": 1 }, { "week": "2026-21", "n": 3 }, { "week": "2026-22", "n": 4 } ], "_tags": [], "_stars": 14, "_contributors": [ { "user": "mitchellmanware", "count": 453, "uuid": 141882492 }, { "user": "kyle-messier", "count": 395, "uuid": 127860447 }, { "user": "sigmafelix", "count": 41, "uuid": 25448786 }, { "user": "copilot", "count": 22, "uuid": 198982749 }, { "user": "makassien", "count": 14, "uuid": 72764715 } ], "_userbio": { "uuid": 22938605, "type": "organization", "name": "National Institute of Environmental Health Science", "description": "The mission of the National Institute of Environmental Health Sciences is to discover how the environment affects people in order to promote healthier lives." }, "_downloads": { "count": 378, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/amadeus" }, "_devurl": "https://github.com/niehs/amadeus", "_pkgdown": "https://niehs.github.io/amadeus/", "_searchresults": 44, "_rbuild": "4.6.0", "_assets": [ "extra/amadeus.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/niehs/amadeus", "_realowner": "niehs", "_cranurl": true, "_releases": [ { "version": "1.0.6", "date": "2024-08-27" }, { "version": "1.0.7", "date": "2024-09-02" }, { "version": "1.1.3", "date": "2024-10-11" }, { "version": "1.1.6", "date": "2024-11-14" }, { "version": "1.2.2", "date": "2025-01-08" }, { "version": "1.2.3", "date": "2025-01-17" }, { "version": "1.2.4.9", "date": "2025-08-24" }, { "version": "1.3.2.1", "date": "2026-01-26" }, { "version": "2.0.0", "date": "2026-05-21" } ], "_exports": [ "apply_extent", "as_mysftime", "bucket_time_by_unit", "calc_apply_time_summary", "calc_check_time", "calc_extents_overlap", "calc_message", "calc_prepare_exact_geoms", "calc_prepare_locs", "calc_prepare_weights", "calc_return_locs", "calc_setcolumns", "calc_summarize_by", "calc_summarize_native_time", "calc_summarize_temporal", "calc_time", "calc_weighted_fun", "calc_worker", "calculate_covariates", "calculate_cropscape", "calculate_drought", "calculate_ecoregion", "calculate_edgar", "calculate_geos", "calculate_gmted", "calculate_goes", "calculate_gridmet", "calculate_groads", "calculate_hms", "calculate_huc", "calculate_koppen_geiger", "calculate_lagged", "calculate_merra2", "calculate_modis", "calculate_modis_daily", "calculate_narr", "calculate_nei", "calculate_nlcd", "calculate_population", "calculate_prism", "calculate_temporal_dummies", "calculate_terraclimate", "calculate_tri", "check_by_time", "check_destfile", "check_for_null_parameters", "check_fun_temporal", "check_geom", "check_mysf", "check_mysftime", "check_unsupported_by", "check_url_status", "check_urls", "collapse_nlcd", "download_aqs", "download_cropscape", "download_data", "download_drought", "download_ecoregion", "download_edgar", "download_geos", "download_gmted", "download_goes", "download_gridmet", "download_groads", "download_hash", "download_hms", "download_huc", "download_improve", "download_koppen_geiger", "download_merra2", "download_modis", "download_narr", "download_nei", "download_nlcd", "download_permit", "download_population", "download_prism", "download_remove_command", "download_remove_zips", "download_run", "download_run_method", "download_sanitize_path", "download_setup_dir", "download_sink", "download_terraclimate", "download_tri", "download_unzip", "drought_weekly_dates", "dt_as_mysftime", "extent_to_modis_tiles", "extract_urls", "generate_date_sequence", "generate_time_sequence", "get_geos_info", "get_merra2_info", "get_modis_info", "get_token", "get_tri_info", "goes_parse_start_datetime", "is_date_proper", "narr_variable", "normalize_by_time_unit", "process_aqs", "process_blackmarble", "process_blackmarble_corners", "process_collection", "process_conformity", "process_covariates", "process_cropscape", "process_drought", "process_ecoregion", "process_edgar", "process_flatten_sds", "process_geos", "process_gmted", "process_gmted_codes", "process_goes", "process_gridmet", "process_gridmet_codes", "process_groads", "process_hms", "process_huc", "process_improve", "process_koppen_geiger", "process_locs_radius", "process_locs_vector", "process_merra2", "process_merra2_time", "process_modis_daily", "process_modis_merge", "process_modis_swath", "process_modis_warp", "process_narr", "process_nei", "process_nlcd", "process_parse_ncdf_day_codes", "process_population", "process_prism", "process_sedac_codes", "process_terraclimate", "process_terraclimate_codes", "process_tri", "process_variable_codes", "read_commands", "rename_time", "setup_nasa_token", "sf_as_mysftime", "sftime_as_mysftime", "sftime_as_sf", "sftime_as_spatraster", "sftime_as_spatrds", "sftime_as_spatvector", "spatraster_as_sftime", "spatrds_as_sftime", "spatvector_as_sftime", "sum_edc" ], "_help": [ { "page": "as_mysftime", "title": "Create an 'sftime' object", "topics": [ "as_mysftime" ] }, { "page": "calculate_covariates", "title": "Calculate covariates wrapper function", "topics": [ "calculate_covariates" ] }, { "page": "calculate_cropscape", "title": "Calculate Cropscape covariates", "topics": [ "calculate_cropscape" ] }, { "page": "calculate_drought", "title": "Calculate drought index covariates", "topics": [ "calculate_drought" ] }, { "page": "calculate_ecoregion", "title": "Calculate ecoregions covariates", "topics": [ "calculate_ecoregion" ] }, { "page": "calculate_edgar", "title": "Calculate EDGAR covariates", "topics": [ "calculate_edgar" ] }, { "page": "calculate_geos", "title": "Calculate atmospheric composition covariates", "topics": [ "calculate_geos" ] }, { "page": "calculate_gmted", "title": "Calculate elevation covariates", "topics": [ "calculate_gmted" ] }, { "page": "calculate_goes", "title": "Calculate NOAA GOES ADP covariates", "topics": [ "calculate_goes" ] }, { "page": "calculate_gridmet", "title": "Calculate gridMET covariates", "topics": [ "calculate_gridmet" ] }, { "page": "calculate_groads", "title": "Calculate roads covariates", "topics": [ "calculate_groads" ] }, { "page": "calculate_hms", "title": "Calculate wildfire smoke covariates", "topics": [ "calculate_hms" ] }, { "page": "calculate_huc", "title": "Calculate HUC covariates", "topics": [ "calculate_huc" ] }, { "page": "calculate_koppen_geiger", "title": "Calculate climate classification covariates", "topics": [ "calculate_koppen_geiger" ] }, { "page": "calculate_lagged", "title": "Calculate temporally lagged covariates", "topics": [ "calculate_lagged" ] }, { "page": "calculate_merra2", "title": "Calculate meteorological and atmospheric covariates", "topics": [ "calculate_merra2" ] }, { "page": "calculate_modis", "title": "Calculate MODIS product covariates", "topics": [ "calculate_modis" ] }, { "page": "calculate_narr", "title": "Calculate meteorological covariates", "topics": [ "calculate_narr" ] }, { "page": "calculate_nei", "title": "Calculate road emissions covariates", "topics": [ "calculate_nei" ] }, { "page": "calculate_nlcd", "title": "Calculate land cover covariates", "topics": [ "calculate_nlcd" ] }, { "page": "calculate_population", "title": "Calculate population density covariates", "topics": [ "calculate_population" ] }, { "page": "calculate_prism", "title": "Calculate PRISM covariates", "topics": [ "calculate_prism" ] }, { "page": "calculate_temporal_dummies", "title": "Calculate temporal dummy covariates", "topics": [ "calculate_temporal_dummies" ] }, { "page": "calculate_terraclimate", "title": "Calculate TerraClimate covariates", "topics": [ "calculate_terraclimate" ] }, { "page": "calculate_tri", "title": "Calculate toxic release covariates", "topics": [ "calculate_tri" ] }, { "page": "download_aqs", "title": "Download air quality data", "topics": [ "download_aqs" ] }, { "page": "download_cropscape", "title": "Download CropScape data", "topics": [ "download_cropscape" ] }, { "page": "download_data", "title": "Download raw data wrapper function", "topics": [ "download_data" ] }, { "page": "download_drought", "title": "Download drought index data", "topics": [ "download_drought" ] }, { "page": "download_ecoregion", "title": "Download ecoregion data", "topics": [ "download_ecoregion" ] }, { "page": "download_edgar", "title": "Download EDGAR Emissions Data", "topics": [ "download_edgar" ] }, { "page": "download_geos", "title": "Download atmospheric composition data", "topics": [ "download_geos" ] }, { "page": "download_gmted", "title": "Download elevation data", "topics": [ "download_gmted" ] }, { "page": "download_goes", "title": "Download NOAA GOES ADP data", "topics": [ "download_goes" ] }, { "page": "download_gridmet", "title": "Download gridMET data", "topics": [ "download_gridmet" ] }, { "page": "download_groads", "title": "Download roads data", "topics": [ "download_groads" ] }, { "page": "download_hms", "title": "Download wildfire smoke data", "topics": [ "download_hms" ] }, { "page": "download_huc", "title": "Download National Hydrography Dataset (NHD) data", "topics": [ "download_huc" ] }, { "page": "download_improve", "title": "Download IMPROVE aerosol monitoring data", "topics": [ "download_improve" ] }, { "page": "download_koppen_geiger", "title": "Download climate classification data", "topics": [ "download_koppen_geiger" ] }, { "page": "download_merra2", "title": "Download meteorological and atmospheric data", "topics": [ "download_merra2" ] }, { "page": "download_modis", "title": "Download MODIS product files", "topics": [ "download_modis" ] }, { "page": "download_narr", "title": "Download meteorological data", "topics": [ "download_narr" ] }, { "page": "download_nei", "title": "Download road emissions data", "topics": [ "download_nei" ] }, { "page": "download_nlcd", "title": "Download National Land Cover Database (NLCD) data", "topics": [ "download_nlcd" ] }, { "page": "download_population", "title": "Download population density data", "topics": [ "download_population" ] }, { "page": "download_prism", "title": "Download PRISM data", "topics": [ "download_prism" ] }, { "page": "download_terraclimate", "title": "Download TerraClimate data", "topics": [ "download_terraclimate" ] }, { "page": "download_tri", "title": "Download toxic release data", "topics": [ "download_tri" ] }, { "page": "dt_as_mysftime", "title": "Convert a 'data.table' to an 'sftime'", "topics": [ "dt_as_mysftime" ] }, { "page": "get_geos_info", "title": "Get GEOS variable lookup information", "topics": [ "get_geos_info" ] }, { "page": "get_merra2_info", "title": "Get MERRA2 variable lookup information", "topics": [ "get_merra2_info" ] }, { "page": "get_modis_info", "title": "Get MODIS product subdataset lookup information", "topics": [ "get_modis_info" ] }, { "page": "get_tri_info", "title": "Get TRI lookup information for chemicals or industries", "topics": [ "get_tri_info" ] }, { "page": "process_aqs", "title": "Process U.S. EPA AQS daily CSV data", "topics": [ "process_aqs" ] }, { "page": "process_blackmarble", "title": "Assign VIIRS Black Marble products corner coordinates to retrieve a merged raster", "topics": [ "process_blackmarble" ] }, { "page": "process_covariates", "title": "Process raw data wrapper function", "topics": [ "process_covariates" ] }, { "page": "process_cropscape", "title": "Process CropScape data", "topics": [ "process_cropscape" ] }, { "page": "process_drought", "title": "Process drought index data", "topics": [ "process_drought" ] }, { "page": "process_ecoregion", "title": "Process ecoregion data", "topics": [ "process_ecoregion" ] }, { "page": "process_edgar", "title": "Process EDGAR emissions data", "topics": [ "process_edgar" ] }, { "page": "process_geos", "title": "Process atmospheric composition data", "topics": [ "process_geos" ] }, { "page": "process_gmted", "title": "Process elevation data", "topics": [ "process_gmted" ] }, { "page": "process_goes", "title": "Process NOAA GOES ADP data", "topics": [ "process_goes" ] }, { "page": "process_gridmet", "title": "Process gridMET data", "topics": [ "process_gridmet" ] }, { "page": "process_groads", "title": "Process roads data", "topics": [ "process_groads" ] }, { "page": "process_hms", "title": "Process wildfire smoke data", "topics": [ "process_hms" ] }, { "page": "process_huc", "title": "Retrieve Hydrologic Unit Code (HUC) data", "topics": [ "process_huc" ] }, { "page": "process_improve", "title": "Process IMPROVE aerosol monitoring data", "topics": [ "process_improve" ] }, { "page": "process_koppen_geiger", "title": "Process climate classification data", "topics": [ "process_koppen_geiger" ] }, { "page": "process_merra2", "title": "Process meteorological and atmospheric data", "topics": [ "process_merra2" ] }, { "page": "process_modis_daily", "title": "Process MODIS files as daily outputs", "topics": [ "process_modis_daily" ] }, { "page": "process_modis_merge", "title": "Process MODIS .hdf files", "topics": [ "process_modis_merge" ] }, { "page": "process_modis_swath", "title": "Mosaic MODIS swaths", "topics": [ "process_modis_swath" ] }, { "page": "process_narr", "title": "Process meteorological data", "topics": [ "process_narr" ] }, { "page": "process_nei", "title": "Process road emissions data", "topics": [ "process_nei" ] }, { "page": "process_nlcd", "title": "Process land cover data", "topics": [ "process_nlcd" ] }, { "page": "process_population", "title": "Process population density data", "topics": [ "process_population" ] }, { "page": "process_prism", "title": "Process PRISM data", "topics": [ "process_prism" ] }, { "page": "process_terraclimate", "title": "Process TerraClimate data", "topics": [ "process_terraclimate" ] }, { "page": "process_tri", "title": "Process toxic release data", "topics": [ "process_tri" ] }, { "page": "setup_nasa_token", "title": "Set up NASA EarthData authentication", "topics": [ "setup_nasa_token" ] }, { "page": "sf_as_mysftime", "title": "Convert an 'sf' to an 'sftime'", "topics": [ "sf_as_mysftime" ] }, { "page": "sftime_as_mysftime", "title": "Convert an 'sftime' to a 'mysftime'", "topics": [ "sftime_as_mysftime" ] }, { "page": "sftime_as_sf", "title": "Convert an 'sftime' to an 'sf'", "topics": [ "sftime_as_sf" ] }, { "page": "sftime_as_spatraster", "title": "Convert an 'sftime' to a 'SpatRaster'", "topics": [ "sftime_as_spatraster" ] }, { "page": "sftime_as_spatrds", "title": "Convert an 'sftime' to a 'SpatRasterDataset'", "topics": [ "sftime_as_spatrds" ] }, { "page": "sftime_as_spatvector", "title": "Convert an 'sftime' to a 'SpatVector'", "topics": [ "sftime_as_spatvector" ] }, { "page": "spatraster_as_sftime", "title": "Convert a 'SpatRaster' to an 'sftime'", "topics": [ "spatraster_as_sftime" ] }, { "page": "spatrds_as_sftime", "title": "Convert a 'SpatRasterDataset' to an 'sftime'", "topics": [ "spatrds_as_sftime" ] }, { "page": "spatvector_as_sftime", "title": "Convert a 'SpatVector' to an 'sftime'", "topics": [ "spatvector_as_sftime" ] }, { "page": "sum_edc", "title": "Calculate isotropic Sum of Exponentially Decaying Contributions (SEDC) covariates", "topics": [ "sum_edc" ] } ], "_pkglogo": "https://github.com/niehs/amadeus/raw/HEAD/man/figures/logo.svg", "_readme": "https://github.com/niehs/amadeus/raw/HEAD/README.md", "_rundeps": [ "abind", "archive", "askpass", "class", "classInt", "cli", "collapse", "cpp11", "curl", "data.table", "DBI", "dplyr", "e1071", "exactextractr", "generics", "glue", "httr2", "KernSmooth", "lattice", "lifecycle", "magrittr", "MASS", "openssl", "pillar", "pkgconfig", "proxy", "purrr", "R6", "rappdirs", "raster", "rbibutils", "Rcpp", "Rdpack", "rlang", "s2", "sf", "sftime", "sp", "stars", "stringi", "stringr", "sys", "terra", "tibble", "tidyr", "tidyselect", "units", "utf8", "vctrs", "withr", "wk" ], "_vignettes": [ { "source": "computational_considerations.Rmd", "filename": "computational_considerations.html", "title": "Computational Considerations", "author": "Kyle Messier, with assistance from GitHub Copilot", "engine": "knitr::rmarkdown", "headings": [ "Why parallelize amadeus workflows?", "Reference: sequential purrr baseline", "Parallel with future + furrr", "Parallel with mirai", "Reproducible pipelines with targets", "Caveats and gotchas" ], "created": "2026-05-20 15:23:59", "modified": "2026-05-20 15:23:59", "commits": 1 }, { "source": "download_functions.Rmd", "filename": "download_functions.html", "title": "download_data Function", "author": "Mitchell Manware", "engine": "knitr::rmarkdown", "headings": [ "Motivation", "download_data", "Parameters", "Standard parameters", "Function Structure", "1. Clean parameters", "2. Generate download URLs and destination file paths", "3. Validate URLs", "4. Download files with httr2", "5. Zip files (if applicable)", "Unit Tests", "Helper functions", "testthat", "Download Example", "download_hms function code" ], "created": "2024-02-08 20:30:59", "modified": "2026-05-21 18:29:22", "commits": 10 }, { "source": "protected_datasets.Rmd", "filename": "protected_datasets.html", "title": "Protected Data Sources", "author": "Kyle Messier, Mitchell Manware", "engine": "knitr::rmarkdown", "headings": [ "Motivation", "NASA EarthData Account", "Approved applications", "Generating a NASA EarthData Token", "Setting Up Authentication in R", "Recommended: persist in ~/.Renviron", "Save to a token file", "Current session only", "How amadeus Uses the Token", "References" ], "created": "2024-07-23 16:21:31", "modified": "2026-05-20 15:23:59", "commits": 3 } ], "_score": 7.567731962548069, "_indexed": true, "_nocasepkg": "amadeus", "_universes": [ "niehs", "kyle-messier" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.1", "date": "2026-05-27T18:11:33.000Z", "distro": "noble", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "e2df8b9c1d9ca21cb5cc169cfff838bd04bd92930edc5190fab48a5500b15810", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.6.0", "os": "linux", "version": "2.0.1", "date": "2026-05-27T18:11:23.000Z", "distro": "noble", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "b8d48fe145053069485327fc59abf5f9d34dad6136e2b633eae01297e038c091", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.5.3", "os": "mac", "version": "2.0.1", "date": "2026-05-27T18:10:21.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "05f40967026465c0c9e866d944e245e88ab2aa8f030556b2f1c2c2b8c80183fd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.6.0", "os": "mac", "version": "2.0.1", "date": "2026-05-27T18:10:06.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "8b7e9ea4234d8355f52f5a3ab5147d98f6c5d0b4ff4c0cdbc28d0e534c78371b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.1", "date": "2026-05-27T18:11:28.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "60d5c96104592fc4ebcdcf8fea7e8ec5d1a1cd7fcbabce777716eeee5f9857eb", "status": "success", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.7.0", "os": "win", "version": "2.0.1", "date": "2026-05-27T18:10:40.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "54c9ddc280b496090cec3dc00ea32e41e2234206c77532d38c58d680c1953057", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.5.3", "os": "win", "version": "2.0.1", "date": "2026-05-27T18:10:33.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "4839d40324ac4674ef26732ffa03a9db0e9231bdfff61312d2e0b42b6481c272", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" }, { "r": "4.6.0", "os": "win", "version": "2.0.1", "date": "2026-05-27T18:10:14.000Z", "commit": "bb0cd5dc0f08ab98754bc303d89d5a10f05663a9", "fileid": "fc3727980980c853c0d6dfc6ed29f602a642cb67be1aaf996577b2d307644448", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/niehs/actions/runs/26529342341" } ] }